Publications

 

Journals:

 

[J.14] A. Manickam and A. Hassibi, “A Compact Admittance Model for Electrode-Elecrolyte Systems,” (under review) Biosensors and Biolectronics.  

[J.13] A. Hassibi, H. Vikalo, J. L. Riechmann and B. Hassibi, “Real-time DNA Microarray Analysis,” Nucleic Acids Research, doi:10.1093/nar/gkp675, 1-12, (2009). [pdf]

[J.12] G. Li, Y. Tousi, A. Hassibi, and E. Afshari, “Delay-line Based Analog-to-Digital Conversion,” IEEE Transaction on Circuits and Systems II (TCAS-II), 56-6, (2009). [pdf]

[J.11] A. Hassibi, Aydin Babakhani and Ali Hajimiri, “A Spectral-Scanning Nuclear Magnetic Resonance Imaging (MRI) Transceiver,” IEEE Journal of Solid-State Circuits (JSSC), 44-6, (2009). [pdf]

[J.10] S. Das, H. Vikalo and A. Hassibi, “Scaling Laws of Biosensors: A Stochastic Approach,” Journal of Applied Physics – Special Topic: Applied Biophysics, 105-10 , (2009). (This papers was also selected for V. J. of Biological Physics Research) [pdf]

[J.9] B. Jang and A. Hassibi, “Biosensor Systems in Standard CMOS Processes: Fact or Fiction?” IEEE Transaction on Industrial Electronics (invited), 56-4, pp. 979-985, (2009). [pdf]

[J.8] H. Vikalo, B. Hassibi and A. Hassibi, “Modeling and Estimation for Real-time Microarrays,” IEEE Journal of Selected Topics in Signal Processing, Special Issue on Genomic and Proteomic Signal Processing, pp. 286-296, (2008). [pdf]

[J.7] A. Hassibi, H. Vikalo and A. Hajimiri, “On Noise Processes and Limits of Performance in Biosensors,” Journal of Applied Physics, 102, (2007) (This papers was also selected for V. J. of Biological Physics Research) [pdf]

[J.6] A. Hassibi and T. H. Lee, “A Programmable 0.18µm CMOS Electrochemical Sensor Microarray for Biomolecular Detection,” IEEE Sensors Journal, 6-6, (2006). [pdf]

[J.5] H. Vikalo, B. Hassibi and A. Hassibi, “A Statistical Model for Microarrays, Optimal Estimation Algorithms, and Limits of Performance,” IEEE Transactions on Signal Processing, Special Issue on Genomics Signal Processing, 54-6, (2006). [pdf]

[J.4] A. Hassibi, S. Zahedi, R. Navid, R. W. Dutton, and T. H. Lee, “Biological Shot-noise and Quantum-Limited SNR in Affinity-Based Biosensor,” Journal of Applied Physics, 97-1, (2005). (This papers was also selected for V. J. of Biological Physics Research) [pdf]

[J.3] A. Hassibi, C. Contag, M. O. Vlade, M. Hafezi, T. H. Lee, R. W. Davis, and N. Pourmand, “Bioluminescence Regenerative Cycle (BRC) System: Theoretical Considerations for Nucleic Acid Quantification Assays,” Journal of Biophysical Chemistry, 116, pp. 175-181, (2005). [pdf]

[J.2] A. Hassibi, R. Navid, R. W. Dutton, and T. H. Lee, “Comprehensive Study of Noise Processes in Electrode Electrolyte Interfaces,” Journal of Applied Physics, 96-2, (2004). [pdf]

[J.1] K. Salama, H. Eltoukhy, A. Hassibi, and A. El Gamal, “Modeling and Simulation of Integrated Bioluminescence Detection Platforms,” Biosensors and Bioelectronics, Special Issue: Micro- and Nano-Bioengineering, 19-11, (2004). [pdf]

 

Conferences:

 

[C.29] S. Das, H. Vikalo and A. Hassibi, “Stochastic Modeling of Reaction Kinetics in Biosensors Using Fokker Planck (FP) Equation” IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), (2009).

[C.28] A. Manickam, A. Chevalier, A. Ellington, M. McDermott, and A. Hassibi, “Integrated Impedance Spectroscopy Microarrays” Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy (PITTCON), (2009).

[C.27] A. Chevalier, J. Lee,  A. Ellington, H. Vikalo, and  A. Hassibi, “FRET-Based Real-time Microarrays” Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy (PITTCON), (2009).

[C.26] B. Jang, P. Cao, A Chevalier, A. Ellington, and A. Hassibi, “A CMOS Fluorescence-based Biosensor Microarray” Tech. Dig. of International Solid-State Circuits Conference (ISSCC), (2009). [pdf]

[C.25] H. Wang, Y. Chen, A. Hassibi, A. Scherer, and A. Hajimiri, “A Frequency-Shift CMOS Magnetic Biosensor Array with Single-bead Sensitivity and No External Magnet” Tech. Dig. of International Solid-State Circuits Conference (ISSCC), (2009). [pdf]

[C.24] A. Hassibi, Y. Liu and R. W. Dutton, “Progress in Biosensor and Bioelectronics Simulations: New Applications for TCAD” Proc. IEEE International Conference on Simulation of Semiconductor Processes and Devices (SISPAD), (2008) (invited). [pdf]

[C.23] B. Jang and A. Hassibi, “Biosensor Systems in Standard CMOS Processes: Fact or Fiction?” Proc. of IEEE International Symposium on Industrial Electronics (ISIE), (2008) (invited).

[C.22] H. Vikalo, B. Hassibi and A. Hassibi, “On Estimation in Real-time Microarrays,” Proc. of IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), (2008).

[C.21] H. Vikalo, B. Hassibi and A. Hassibi, “Signal Processing Aspects of Real-time DNA Microarrays,” Proc. of IEEE International Workshop on Computational Advances in Multi-Sensor Adaptive Processing, (2007) (invited).

[C.20] H. Vikalo, A. Hassibi and B. Hassibi, “Signal Processing for Real-time Microarrays,” Proc. of IEEE Asilomar Conf. on Signals, Systems and Computers, (2007) (invited).

[C.19] L. H. Regan, A. Hassibi, T. S. Rappaport, and C. L. Christianson, “Novel On-chip Antenna Structures and Frequency Selective Surface (FSS) Approaches for Millimeter Wave Devices,” Proc. of IEEE Vehicular Technology Conference (VTC), pp. 2051-2055, (2007).

[C.18] H. Vikalo, B. Hassibi, M. Stojnic, and A. Hassibi, “Modeling the Kinetics of Hybridization in Microarrays,” Proc. of IEEE Workshop on Genomics Signal Processing and Statistics (GENSIPS), (2007).

[C.17] A. Hassibi, A. Babakhani and A. Hajimiri, “A Spectral-Scanning Magnetic Resonance Imaging (MRI) Integrated System,” Proc. of IEEE Custom Integrated Circuits Conference (CICC), (2007). [pdf]

[C.16] H. Vikalo, B. Hassibi and A. Hassibi, “ML Detection of DNA Initial Copy in Polymerase Chain Reaction (PCR) Processes,” Proc. of IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), (2007).

[C.15] H. Vikalo, B. Hassibi and A. Hassibi, “On Limits of Performance of DNA Microarrays,” Proc. of IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), (2006). [pdf]

[C.14] A. Hassibi and M. Sharif, “Efficiency of Polymerase Chain Reaction Processes: A Stochastic Model,” Proc. of IEEE Workshop on Genomics Signal Processing and Statistics (GENSIPS), (2006). [pdf]

[C.13] H. Vikalo, B. Hassibi and A. Hassibi, “On Joint Maximum-Likelihood Estimation of PCR Efficiency and Initial Amount of Target,” Proc. IEEE Workshop on Genomic Signal Processing and Statistics (GENSIPS), (2006). [pdf]

[C.12] A. Hassibi and T. H. Lee, “A Programmable Electrochemical Biosensor Array in 0.18µm Standard CMOS,” Tech. Dig. IEEE International Solid-State Circuits Conference (ISSCC), (2005). [pdf]

[C.11] T. Al-Attar, A. Hassibi and T. H. Lee, “A 77GHz Monolithic IMPATT Transmitter in Standard CMOS Technology,” Proc. of IEEE MTT-S International Microwave Symposium, (2005). [pdf]

[C.10] A. Agah, A. Hassibi, J. D. Plummer, and P. B. Griffin, “Design Requirements for Integrated Biosensor Arrays,” Proc. of SPIE, vol. 5699, pp. 403-413, (2005). [pdf]

[C.9] A. Hassibi and H. Vikalo, “A Probabilistic Model for Inherent Noise and Systematic Errors in Microarray Systems,” Proc. of IEEE Workshop on Genomics Signal Processing and Statistics (GENSIPS), (2005). [Journal Version pdf]

[C.8] H. Vikalo, A. Hassibi and B. Hassibi, “Optimal Estimation of Gene Expression Levels in Microarrays,” Proc. of IEEE Workshop on Genomics Signal Processing and Statistics (GENSIPS), (2005). [Journal Version pdf]

[C.7] A. Hassibi, T. H. Lee, R. Navid, R. W. Dutton, and S. Zahedi, “Effects of Scaling on the SNR and Speed of Biosensors,” Proc. of 26th IEEE International Conference of Engineering in Medicine and Biology (EMBS), (2004). [Journal Version pdf]

[C.6] H. Kakavand, D. O’Brien, A. Hassibi, and T. H. Lee, “Maximum a Posteriori (MAP) Estimator for Polymerase Chain Reaction (PCR) Processes,” Proc. of 26th IEEE International Conference of Engineering in Medicine and Biology (EMBS), (2004). [pdf]

[C.5] S. Zahedi , R. Navid and A. Hassibi, “Statistical Modeling of Biochemical Detection Systems,” Proc. of 26th IEEE International Conference of Engineering in Medicine and Biology (EMBS), (2004). [pdf]

[C.4] A. Hassibi, H. Kakavand and T. H. Lee “A Stochastic Model and Simulation Algorithm for Polymerase Chain Reaction (PCR) Systems,” Proc. of IEEE Workshop on Genomics Signal Processing and Statistics (GENSIPS), (2004). [pdf]

[C.3] H. Vikalo, A. Hassibi and B. Hassibi, “Nucleic Acid Detection Using Bioluminescence Regenerative Cycle and Statistical Signal Processing,” Proc. of IEEE Workshop on Genomics Signal Processing and Statistics (GENSIPS), (2004). [pdf]

[C.2] A. Hassibi, T. H. Lee, R. W. Davis, and N. Pourmand, “Bioluminescence Regenerative Cycle (BRC) System for Nucleic Acid Quantification,” Proc. of SPIE, Vol. 4966, pp. 65-75, (2003). [Journal Version pdf]

[C.1] K. Salama, H. Eltoukhy, A. Hassibi, and A. El Gamal, “Modeling and Simulation of Integrated Bioluminescence Detection Platforms,” Proc. of SPIE, vol. 4966, pp. 106-116, (2003). [Journal Version pdf]